PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29842.m003555
Common NameLOC8277992, RCOM_0903720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 580aa    MW: 63095.8 Da    PI: 6.3671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29842.m003555genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-31335393259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  29842.m003555 335 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTSILITTYEGNHNHP 393
                    7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33319395IPR003657WRKY domain
SuperFamilySSF1182906.28E-28327395IPR003657WRKY domain
PROSITE profilePS5081129.735329395IPR003657WRKY domain
SMARTSM007746.6E-38334394IPR003657WRKY domain
PfamPF031061.1E-26336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDKGWGLTLD SDHPVFSFFP NSATANKPAD SFLKINKRNS FDASDPVRMF PFSVNLPSPA  60
DDNRLIVGEV DFFSEKKNNV VSDNHHSDDS KTTTISVKKE NSYADIAPKS NDVNTGLHLL  120
TANTGSDQST VDDGASSEVD DKRSKFELAQ LQIDLQRMNN ENQRLRDMLT QVTNNYNALQ  180
MHLVALMQQQ QQQNHGPEAT HEHEVVQGKS EEKKHEVVPR QFLDLGPSAE TDEISHSSSD  240
DERTRSGTPQ TNTETASVKN NGKIEMSTFD QENSSFRDGK GIGREESPES ETQGWNPNKV  300
QKLNPASKGI DQNAEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC  360
TMAVGCPVRK QVQRCAEDTS ILITTYEGNH NHPLPPAAMA MASTTTAAAS MLLSGSMSSA  420
DGIMNPNLLA RAILPCSSSM ATISASAPFP TVTLDLTHSP NPLQVQRPPT HFQVPFPGQP  480
QNFASVTPQQ LPQVFGQALY NQSKFSGLQL SQELPQSQQL HPSQQHSLVD SVSAATAAIT  540
ADPNFTAALA AAITSIIGGG NGNTSTTHNN SNGNNTSSRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-23321397176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518444.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-169WRKY6_ARATH; WRKY transcription factor 6
TrEMBLB9RXH50.0B9RXH5_RICCO; WRKY transcription factor, putative
STRINGPOPTR_0004s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-143WRKY DNA-binding protein 31